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Protein-protein interactions improve multiple transcription factor binding site prediction

Laurila, Kirsti; Pukkila, Heidi; Yli-Harja, Olli; Lähdesmäki, Harri
-2009

Genome-wide Analysis of STAT3-Mediated Transcription during Early Human Th17 Cell Differentiation

Referentgranskad
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DOI
10.1016/j.celrep.2017.05.013
Tripathi, Subhash K.; Chen, Zhi; Larjo, Antti; Kanduri, Kartiek; Nousiainen, Kari; Äijo, Tarmo; Rica...
Cell reports2017

Human transcription factor protein interaction networks

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DOI
10.1038/s41467-022-28341-5
Göös, Helka; Kinnunen, Matias; Salokas, Kari; Tan, Zenglai; Liu, Xiaonan; Yadav, Leena; Zhang, Qin; ...
Nature communications2022

Disentangling transcription factor binding site complexity

Referentgranskad
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DOI
10.1093/nar/gky683
Eggeling, Ralf
Nucleic Acids Research2018

Modeling binding specificities of transcription factor pairs with random forests

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DOI
10.1186/s12859-022-04734-7
Antikainen, Anni A.; Heinonen, Markus; Lähdesmäki, Harri
Bmc bioinformatics2022

Associative Clustering to Find Dependencies Between Expression Profiles and Transcription Factor Binding

Nikkilä, Janne; Roos, C.; Sinkkonen, Janne; Kaski, S.
-2003

Integration of Transcription Factor Binding and Gene Expression by Associative Custering

Referentgranskad
Nikkilä, J.; Roos, C.; Kaski, S.
-2005

Role of Circadian Transcription Factor Rev-Erb in Metabolism and Tissue Fibrosis

Referentgranskad
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DOI
10.3390/ijms232112954
Raza, Ghulam Shere; Sodum, Nalini; Kaya, Yagmur; Herzig, Karl-Heinz
International journal of molecular sciences2022

Nuclear Factor I Family Members are Key Transcription Factors Regulating Gene Expression

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DOI
10.1016/j.mcpro.2024.100890
Malaymar Pinar, Dicle; Göös, Helka; Tan, Zenglai; Kumpula, Esa-Pekka; Chowdhury, Iftekhar; Wang, Zix...
Molecular and cellular proteomics2025

Transcription factor 7-like 2 (TCF7L2)

Referentgranskad
DOI
10.1007/978-3-319-01574-3_14
Grant, Struan F. A.; Groop, L.
Springer2016

Protein-protein interactions improve multiple transcription factor binding site prediction

2009

Genome-wide Analysis of STAT3-Mediated Transcription during Early Human Th17 Cell Differentiation

Referentgranskad
Öppen tillgång
DOI
10.1016/j.celrep.2017.05.013
2017

Human transcription factor protein interaction networks

Referentgranskad
Öppen tillgång
DOI
10.1038/s41467-022-28341-5
2022

Disentangling transcription factor binding site complexity

Referentgranskad
Öppen tillgång
DOI
10.1093/nar/gky683
2018

Modeling binding specificities of transcription factor pairs with random forests

Referentgranskad
Öppen tillgång
DOI
10.1186/s12859-022-04734-7
2022

Associative Clustering to Find Dependencies Between Expression Profiles and Transcription Factor Binding

2003

Integration of Transcription Factor Binding and Gene Expression by Associative Custering

Referentgranskad
2005

Role of Circadian Transcription Factor Rev-Erb in Metabolism and Tissue Fibrosis

Referentgranskad
Öppen tillgång
DOI
10.3390/ijms232112954
2022

Nuclear Factor I Family Members are Key Transcription Factors Regulating Gene Expression

Referentgranskad
Öppen tillgång
DOI
10.1016/j.mcpro.2024.100890
2025

Transcription factor 7-like 2 (TCF7L2)

Referentgranskad
DOI
10.1007/978-3-319-01574-3_14
2016